test_dask.py
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from __future__ import print_function, division, absolute_import
import os
import pytest
from random import random
from uuid import uuid4
from time import sleep
from .. import Parallel, delayed, parallel_backend
from ..parallel import ThreadingBackend, AutoBatchingMixin
from .._dask import DaskDistributedBackend
distributed = pytest.importorskip('distributed')
from distributed import Client, LocalCluster, get_client
from distributed.metrics import time
from distributed.utils_test import cluster, inc
def noop(*args, **kwargs):
pass
def slow_raise_value_error(condition, duration=0.05):
sleep(duration)
if condition:
raise ValueError("condition evaluated to True")
def count_events(event_name, client):
worker_events = client.run(lambda dask_worker: dask_worker.log)
event_counts = {}
for w, events in worker_events.items():
event_counts[w] = len([event for event in list(events)
if event[1] == event_name])
return event_counts
def test_simple(loop):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client: # noqa: F841
with parallel_backend('dask') as (ba, _):
seq = Parallel()(delayed(inc)(i) for i in range(10))
assert seq == [inc(i) for i in range(10)]
with pytest.raises(ValueError):
Parallel()(delayed(slow_raise_value_error)(i == 3)
for i in range(10))
seq = Parallel()(delayed(inc)(i) for i in range(10))
assert seq == [inc(i) for i in range(10)]
def test_dask_backend_uses_autobatching(loop):
assert (DaskDistributedBackend.compute_batch_size
is AutoBatchingMixin.compute_batch_size)
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client: # noqa: F841
with parallel_backend('dask') as (ba, _):
with Parallel() as parallel:
# The backend should be initialized with a default
# batch size of 1:
backend = parallel._backend
assert isinstance(backend, DaskDistributedBackend)
assert backend.parallel is parallel
assert backend._effective_batch_size == 1
# Launch many short tasks that should trigger
# auto-batching:
parallel(
delayed(lambda: None)()
for _ in range(int(1e4))
)
assert backend._effective_batch_size > 10
def random2():
return random()
def test_dont_assume_function_purity(loop):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client: # noqa: F841
with parallel_backend('dask') as (ba, _):
x, y = Parallel()(delayed(random2)() for i in range(2))
assert x != y
@pytest.mark.parametrize("mixed", [True, False])
def test_dask_funcname(loop, mixed):
from joblib._dask import Batch
if not mixed:
tasks = [delayed(inc)(i) for i in range(4)]
batch_repr = 'batch_of_inc_4_calls'
else:
tasks = [
delayed(abs)(i) if i % 2 else delayed(inc)(i) for i in range(4)
]
batch_repr = 'mixed_batch_of_inc_4_calls'
assert repr(Batch(tasks)) == batch_repr
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client:
with parallel_backend('dask') as (ba, _):
_ = Parallel(batch_size=2, pre_dispatch='all')(tasks)
def f(dask_scheduler):
return list(dask_scheduler.transition_log)
batch_repr = batch_repr.replace('4', '2')
log = client.run_on_scheduler(f)
assert all('batch_of_inc' in tup[0] for tup in log)
def test_no_undesired_distributed_cache_hit(loop):
# Dask has a pickle cache for callables that are called many times. Because
# the dask backends used to wrapp both the functions and the arguments
# under instances of the Batch callable class this caching mechanism could
# lead to bugs as described in: https://github.com/joblib/joblib/pull/1055
# The joblib-dask backend has been refactored to avoid bundling the
# arguments as an attribute of the Batch instance to avoid this problem.
# This test serves as non-regression problem.
# Use a large number of input arguments to give the AutoBatchingMixin
# enough tasks to kick-in.
lists = [[] for _ in range(100)]
np = pytest.importorskip('numpy')
X = np.arange(int(1e6))
def isolated_operation(list_, X=None):
list_.append(uuid4().hex)
return list_
cluster = LocalCluster(n_workers=1, threads_per_worker=2)
client = Client(cluster)
try:
with parallel_backend('dask') as (ba, _):
# dispatches joblib.parallel.BatchedCalls
res = Parallel()(
delayed(isolated_operation)(list_) for list_ in lists
)
# The original arguments should not have been mutated as the mutation
# happens in the dask worker process.
assert lists == [[] for _ in range(100)]
# Here we did not pass any large numpy array as argument to
# isolated_operation so no scattering event should happen under the
# hood.
counts = count_events('receive-from-scatter', client)
assert sum(counts.values()) == 0
assert all([len(r) == 1 for r in res])
with parallel_backend('dask') as (ba, _):
# Append a large array which will be scattered by dask, and
# dispatch joblib._dask.Batch
res = Parallel()(
delayed(isolated_operation)(list_, X=X) for list_ in lists
)
# This time, auto-scattering should have kicked it.
counts = count_events('receive-from-scatter', client)
assert sum(counts.values()) > 0
assert all([len(r) == 1 for r in res])
finally:
client.close()
cluster.close()
class CountSerialized(object):
def __init__(self, x):
self.x = x
self.count = 0
def __add__(self, other):
return self.x + getattr(other, 'x', other)
__radd__ = __add__
def __reduce__(self):
self.count += 1
return (CountSerialized, (self.x,))
def add5(a, b, c, d=0, e=0):
return a + b + c + d + e
def test_manual_scatter(loop):
x = CountSerialized(1)
y = CountSerialized(2)
z = CountSerialized(3)
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client: # noqa: F841
with parallel_backend('dask', scatter=[x, y]) as (ba, _):
f = delayed(add5)
tasks = [f(x, y, z, d=4, e=5),
f(x, z, y, d=5, e=4),
f(y, x, z, d=x, e=5),
f(z, z, x, d=z, e=y)]
expected = [func(*args, **kwargs)
for func, args, kwargs in tasks]
results = Parallel()(tasks)
# Scatter must take a list/tuple
with pytest.raises(TypeError):
with parallel_backend('dask', loop=loop, scatter=1):
pass
assert results == expected
# Scattered variables only serialized once
assert x.count == 1
assert y.count == 1
# Depending on the version of distributed, the unscattered z variable
# is either pickled 4 or 6 times, possibly because of the memoization
# of objects that appear several times in the arguments of a delayed
# task.
assert z.count in (4, 6)
def test_auto_scatter(loop):
np = pytest.importorskip('numpy')
data1 = np.ones(int(1e4), dtype=np.uint8)
data2 = np.ones(int(1e4), dtype=np.uint8)
data_to_process = ([data1] * 3) + ([data2] * 3)
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client:
with parallel_backend('dask') as (ba, _):
# Passing the same data as arg and kwarg triggers a single
# scatter operation whose result is reused.
Parallel()(delayed(noop)(data, data, i, opt=data)
for i, data in enumerate(data_to_process))
# By default large array are automatically scattered with
# broadcast=1 which means that one worker must directly receive
# the data from the scatter operation once.
counts = count_events('receive-from-scatter', client)
# assert counts[a['address']] + counts[b['address']] == 2
assert 2 <= counts[a['address']] + counts[b['address']] <= 4
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client:
with parallel_backend('dask') as (ba, _):
Parallel()(delayed(noop)(data1[:3], i) for i in range(5))
# Small arrays are passed within the task definition without going
# through a scatter operation.
counts = count_events('receive-from-scatter', client)
assert counts[a['address']] == 0
assert counts[b['address']] == 0
@pytest.mark.parametrize("retry_no", list(range(2)))
def test_nested_scatter(loop, retry_no):
np = pytest.importorskip('numpy')
NUM_INNER_TASKS = 10
NUM_OUTER_TASKS = 10
def my_sum(x, i, j):
return np.sum(x)
def outer_function_joblib(array, i):
client = get_client() # noqa
with parallel_backend("dask"):
results = Parallel()(
delayed(my_sum)(array[j:], i, j) for j in range(
NUM_INNER_TASKS)
)
return sum(results)
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as _:
with parallel_backend("dask"):
my_array = np.ones(10000)
_ = Parallel()(
delayed(outer_function_joblib)(
my_array[i:], i) for i in range(NUM_OUTER_TASKS)
)
def test_nested_backend_context_manager(loop):
def get_nested_pids():
pids = set(Parallel(n_jobs=2)(delayed(os.getpid)() for _ in range(2)))
pids |= set(Parallel(n_jobs=2)(delayed(os.getpid)() for _ in range(2)))
return pids
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client:
with parallel_backend('dask') as (ba, _):
pid_groups = Parallel(n_jobs=2)(
delayed(get_nested_pids)()
for _ in range(10)
)
for pid_group in pid_groups:
assert len(set(pid_group)) <= 2
# No deadlocks
with Client(s['address'], loop=loop) as client: # noqa: F841
with parallel_backend('dask') as (ba, _):
pid_groups = Parallel(n_jobs=2)(
delayed(get_nested_pids)()
for _ in range(10)
)
for pid_group in pid_groups:
assert len(set(pid_group)) <= 2
def test_nested_backend_context_manager_implicit_n_jobs(loop):
# Check that Parallel with no explicit n_jobs value automatically selects
# all the dask workers, including in nested calls.
def _backend_type(p):
return p._backend.__class__.__name__
def get_nested_implicit_n_jobs():
with Parallel() as p:
return _backend_type(p), p.n_jobs
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client: # noqa: F841
with parallel_backend('dask') as (ba, _):
with Parallel() as p:
assert _backend_type(p) == "DaskDistributedBackend"
assert p.n_jobs == -1
all_nested_n_jobs = p(
delayed(get_nested_implicit_n_jobs)()
for _ in range(2)
)
for backend_type, nested_n_jobs in all_nested_n_jobs:
assert backend_type == "DaskDistributedBackend"
assert nested_n_jobs == -1
def test_errors(loop):
with pytest.raises(ValueError) as info:
with parallel_backend('dask'):
pass
assert "create a dask client" in str(info.value).lower()
def test_correct_nested_backend(loop):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client: # noqa: F841
# No requirement, should be us
with parallel_backend('dask') as (ba, _):
result = Parallel(n_jobs=2)(
delayed(outer)(nested_require=None) for _ in range(1))
assert isinstance(result[0][0][0], DaskDistributedBackend)
# Require threads, should be threading
with parallel_backend('dask') as (ba, _):
result = Parallel(n_jobs=2)(
delayed(outer)(nested_require='sharedmem')
for _ in range(1))
assert isinstance(result[0][0][0], ThreadingBackend)
def outer(nested_require):
return Parallel(n_jobs=2, prefer='threads')(
delayed(middle)(nested_require) for _ in range(1)
)
def middle(require):
return Parallel(n_jobs=2, require=require)(
delayed(inner)() for _ in range(1)
)
def inner():
return Parallel()._backend
def test_secede_with_no_processes(loop):
# https://github.com/dask/distributed/issues/1775
with Client(loop=loop, processes=False, set_as_default=True):
with parallel_backend('dask'):
Parallel(n_jobs=4)(delayed(id)(i) for i in range(2))
def _worker_address(_):
from distributed import get_worker
return get_worker().address
def test_dask_backend_keywords(loop):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client: # noqa: F841
with parallel_backend('dask', workers=a['address']) as (ba, _):
seq = Parallel()(
delayed(_worker_address)(i) for i in range(10))
assert seq == [a['address']] * 10
with parallel_backend('dask', workers=b['address']) as (ba, _):
seq = Parallel()(
delayed(_worker_address)(i) for i in range(10))
assert seq == [b['address']] * 10
def test_cleanup(loop):
with Client(processes=False, loop=loop) as client:
with parallel_backend('dask'):
Parallel()(delayed(inc)(i) for i in range(10))
start = time()
while client.cluster.scheduler.tasks:
sleep(0.01)
assert time() < start + 5
assert not client.futures
@pytest.mark.parametrize("cluster_strategy", ["adaptive", "late_scaling"])
@pytest.mark.skipif(
distributed.__version__ <= '2.1.1' and distributed.__version__ >= '1.28.0',
reason="distributed bug - https://github.com/dask/distributed/pull/2841")
def test_wait_for_workers(cluster_strategy):
cluster = LocalCluster(n_workers=0, processes=False, threads_per_worker=2)
client = Client(cluster)
if cluster_strategy == "adaptive":
cluster.adapt(minimum=0, maximum=2)
elif cluster_strategy == "late_scaling":
# Tell the cluster to start workers but this is a non-blocking call
# and new workers might take time to connect. In this case the Parallel
# call should wait for at least one worker to come up before starting
# to schedule work.
cluster.scale(2)
try:
with parallel_backend('dask'):
# The following should wait a bit for at least one worker to
# become available.
Parallel()(delayed(inc)(i) for i in range(10))
finally:
client.close()
cluster.close()
def test_wait_for_workers_timeout():
# Start a cluster with 0 worker:
cluster = LocalCluster(n_workers=0, processes=False, threads_per_worker=2)
client = Client(cluster)
try:
with parallel_backend('dask', wait_for_workers_timeout=0.1):
# Short timeout: DaskDistributedBackend
msg = "DaskDistributedBackend has no worker after 0.1 seconds."
with pytest.raises(TimeoutError, match=msg):
Parallel()(delayed(inc)(i) for i in range(10))
with parallel_backend('dask', wait_for_workers_timeout=0):
# No timeout: fallback to generic joblib failure:
msg = "DaskDistributedBackend has no active worker"
with pytest.raises(RuntimeError, match=msg):
Parallel()(delayed(inc)(i) for i in range(10))
finally:
client.close()
cluster.close()