brain_age_3d.py
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""" 3D brain age model"""
from box import Box
from torch import nn
from torch.nn import init
def conv_blk(in_channel, out_channel):
return nn.Sequential(
nn.Conv3d(in_channel, out_channel, kernel_size=3, stride=1, padding=1),
nn.InstanceNorm3d(out_channel), nn.MaxPool3d(2, stride=2), nn.ReLU()
)
class Model(nn.Module):
def __init__(self):
super(Model, self).__init__()
self.conv1 = conv_blk(1, 32)
self.conv2 = conv_blk(32, 64)
self.conv3 = conv_blk(64, 128)
self.conv4 = conv_blk(128, 256)
self.conv5 = conv_blk(256, 256)
self.conv6 = nn.Sequential(nn.Conv3d(256, 64, kernel_size=1, stride=1),
nn.InstanceNorm3d(64), nn.ReLU(),
nn.AvgPool3d(kernel_size=(2, 3, 2)))
self.drop = nn.Dropout3d(p=0.5)
self.output = nn.Conv3d(64, 1, kernel_size=1, stride=1)
init.constant_(self.output.bias, 62.68)
def forward(self, x):
x = self.conv1(x)
x = self.conv2(x)
x = self.conv3(x)
x = self.conv4(x)
x = self.conv5(x)
x = self.conv6(x)
x = self.drop(x)
x = self.output(x)
return Box({"y_pred": x})
def get_arch(*args, **kwargs):
return {"net": Model()}